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| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Eintracht Braunschweig | 36 | 17 | 12 | 7 | 33:12 | 21 | 63 |
| 2 |
|
Erzgebirge Aue | 36 | 14 | 16 | 6 | 32:21 | 11 | 58 |
| 3 |
|
VfL Osnabrück | 36 | 15 | 11 | 10 | 29:19 | 10 | 56 |
| 4 |
|
FC Carl Zeiss Jena | 36 | 15 | 10 | 11 | 31:22 | 9 | 55 |
| 5 |
|
FC Ingolstadt 04 | 36 | 15 | 10 | 11 | 33:27 | 6 | 55 |
| 6 |
|
SV Sandhausen | 36 | 15 | 10 | 11 | 34:32 | 2 | 55 |
| 7 |
|
Kickers Offenbach | 36 | 13 | 14 | 9 | 22:18 | 4 | 53 |
| 8 |
|
Bayern München II | 36 | 13 | 14 | 9 | 29:29 | 0 | 53 |
| 9 |
|
Rot-Weiß Erfurt | 36 | 13 | 11 | 12 | 21:22 | -1 | 50 |
| 10 |
|
1. FC Heidenheim 1846 | 36 | 12 | 13 | 11 | 36:31 | 5 | 49 |
| 11 |
|
Werder Bremen II | 36 | 13 | 8 | 15 | 28:28 | 0 | 47 |
| 12 |
|
Jahn Regensburg | 36 | 11 | 14 | 11 | 26:27 | -1 | 47 |
| 13 |
|
SpVgg Unterhaching | 36 | 12 | 9 | 15 | 22:27 | -5 | 45 |
| 14 |
|
Dynamo Dresden | 36 | 11 | 10 | 15 | 17:24 | -7 | 43 |
| 15 |
|
Wuppertaler SV | 36 | 11 | 10 | 15 | 25:36 | -11 | 43 |
| 16 |
|
VfB Stuttgart II | 36 | 11 | 8 | 17 | 22:30 | -8 | 41 |
| 17 |
|
Borussia Dortmund II | 36 | 10 | 10 | 16 | 21:28 | -7 | 40 |
| 18 |
|
SV Wehen Wiesbaden | 36 | 10 | 10 | 16 | 25:34 | -9 | 40 |
| 19 |
|
Holstein Kiel | 36 | 8 | 14 | 14 | 27:34 | -7 | 38 |
| 20 |
|
Wacker Burghausen | 36 | 8 | 12 | 16 | 21:33 | -12 | 36 |
| Promotie | |
| Promotie en degradatie | |
| Degradatie |
