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| 05.02.1999 | 19:00 | 1. FC Magdeburg | - | VfB Leipzig | 1:0 (0:0) | |
| 06.02.1999 | 14:00 | Chemnitzer FC | - | VFC Plauen | 4:0 (1:0) | |
| 14:00 | 1. FC Union Berlin | - | SV Babelsberg 03 | 3:0 (1:0) | ||
| 14:00 | FC Carl Zeiss Jena | - | SD Croatia Berlin | 2:1 (1:1) | ||
| 14:00 | Stahl Eisenhüttenstadt | - | Rot-Weiß Erfurt | 1:1 (1:1) | ||
| 07.02.1999 | 14:00 | Spandauer SV | - | Erzgebirge Aue | 0:1 (0:1) | |
| 10.03.1999 | 14:00 | FSV Zwickau | - | FC Berlin | 3:2 (0:2) | |
| 14.04.1999 | 18:00 | Dynamo Dresden | - | Dresdner SC | 0:1 (0:1) | |
| 28.04.1999 | 18:00 | Sachsen Leipzig | - | Lok Altmark Stendal | 1:1 (0:0) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
1. FC Union Berlin | 20 | 13 | 2 | 5 | 37:10 | 27 | 41 |
| 2 |
|
VfB Leipzig | 20 | 12 | 3 | 5 | 39:23 | 16 | 39 |
| 3 |
|
FSV Zwickau | 20 | 11 | 5 | 4 | 32:18 | 14 | 38 |
| 4 |
|
VFC Plauen | 20 | 10 | 8 | 2 | 35:24 | 11 | 38 |
| 5 |
|
1. FC Magdeburg | 20 | 11 | 5 | 4 | 34:24 | 10 | 38 |
| 6 |
|
Chemnitzer FC | 20 | 10 | 7 | 3 | 29:11 | 18 | 37 |
| 7 |
|
Erzgebirge Aue | 20 | 10 | 4 | 6 | 27:20 | 7 | 34 |
| 8 |
|
Rot-Weiß Erfurt | 20 | 8 | 7 | 5 | 28:24 | 4 | 31 |
| 9 |
|
FC Berlin | 20 | 8 | 5 | 7 | 29:26 | 3 | 29 |
| 10 |
|
FC Carl Zeiss Jena | 20 | 8 | 5 | 7 | 21:19 | 2 | 29 |
| 11 |
|
Sachsen Leipzig | 20 | 6 | 6 | 8 | 31:41 | -10 | 24 |
| 12 |
|
Lok Altmark Stendal | 20 | 6 | 3 | 11 | 21:32 | -11 | 21 |
| 13 |
|
Dresdner SC | 20 | 5 | 5 | 10 | 14:27 | -13 | 20 |
| 14 |
|
Dynamo Dresden | 20 | 5 | 3 | 12 | 22:31 | -9 | 18 |
| 15 |
|
Spandauer SV | 20 | 4 | 5 | 11 | 19:34 | -15 | 17 |
| 16 |
|
SV Babelsberg 03 | 20 | 4 | 5 | 11 | 18:36 | -18 | 17 |
| 17 |
|
Stahl Eisenhüttenstadt | 20 | 2 | 7 | 11 | 19:33 | -14 | 13 |
| 18 |
|
SD Croatia Berlin | 20 | 4 | 1 | 15 | 15:37 | -22 | 13 |
